scater_logNormCounts {singleCellTK}R Documentation

scater_logNormCounts Uses logNormCounts to log normalize input data

Description

scater_logNormCounts Uses logNormCounts to log normalize input data

Usage

scater_logNormCounts(
  inSCE,
  logAssayName = "ScaterLogNormCounts",
  useAssay = "counts"
)

Arguments

inSCE

Input SingleCellExperiment object

logAssayName

New assay name for log normalized data

useAssay

Input assay

Value

inSCE Updated SingleCellExperiment object that contains the new log normalized data

Author(s)

Irzam Sarfraz

Examples

data(sce_chcl, package = "scds")
sce_chcl <- scater_logNormCounts(sce_chcl,"logcounts", "counts")

[Package singleCellTK version 2.0.0 Index]