trimCounts {singleCellTK} | R Documentation |
Trims an input count matrix such that each value greater than a threshold value and each value less than a provided lower threshold value is trimmed to the lower treshold value.
trimCounts(counts, trimValue = c(10, -10))
counts |
matrix |
trimValue |
where trimValue[1] for upper threshold and trimValue[2] as lower threshold (default is c(10,-10)) |
trimmed counts matrix
data(sce_chcl, package = "scds") assay(sce_chcl, "countsTrimmed") <- trimCounts(assay(sce_chcl, "counts"), c(10, -10))