seuratJackStrawPlot {singleCellTK} | R Documentation |
seuratJackStrawPlot Computes the plot object for jackstraw plot from the pca slot in the input sce object
seuratJackStrawPlot(inSCE, dims = NULL)
inSCE |
(sce) object from which to compute the jackstraw plot (pca should be computed) |
dims |
Number of components to plot in Jackstraw. If |
plot object
data(scExample, package = "singleCellTK") ## Not run: sce <- seuratNormalizeData(sce, useAssay = "counts") sce <- seuratFindHVG(sce, useAssay = "counts") sce <- seuratScaleData(sce, useAssay = "counts") sce <- seuratPCA(sce, useAssay = "counts") sce <- seuratComputeJackStraw(sce, useAssay = "counts") seuratJackStrawPlot(sce) ## End(Not run)