seuratRunTSNE {singleCellTK} | R Documentation |
seuratRunTSNE Computes tSNE from the given sce object and stores the tSNE computations back into the sce object
seuratRunTSNE( inSCE, useReduction = c("pca", "ica"), reducedDimName = "seuratTSNE", dims = 10, perplexity = 30 )
inSCE |
(sce) object on which to compute the tSNE |
useReduction |
selected reduction algorithm to use for computing tSNE. One of "pca" or "ica". Default |
reducedDimName |
Name of new reducedDims object containing Seurat tSNE Default |
dims |
Number of reduction components to use for tSNE computation. Default |
perplexity |
Adjust the preplexity tuneable parameter for the underlying tSNE call. Default |
Updated sce object with tSNE computations stored