seuratComputeJackStraw {singleCellTK} | R Documentation |
seuratComputeJackStraw Compute jackstraw plot and store the computations in the input sce object
seuratComputeJackStraw(inSCE, useAssay, dims = NULL)
inSCE |
(sce) object on which to compute and store jackstraw plot |
useAssay |
Assay containing scaled counts to use in JackStraw calculation. |
dims |
Number of components to test in Jackstraw. If |
Updated SingleCellExperiment
object with jackstraw computations stored in it
data(scExample, package = "singleCellTK") ## Not run: sce <- seuratNormalizeData(sce, useAssay = "counts") sce <- seuratFindHVG(sce, useAssay = "counts") sce <- seuratScaleData(sce, useAssay = "counts") sce <- seuratPCA(sce, useAssay = "counts") sce <- seuratComputeJackStraw(sce, useAssay = "counts") ## End(Not run)