scran_modelGeneVar {singleCellTK}R Documentation

scran_modelGeneVar Generates and stores variability data from scran::modelGeneVar in the input singleCellExperiment object

Description

scran_modelGeneVar Generates and stores variability data from scran::modelGeneVar in the input singleCellExperiment object

Usage

scran_modelGeneVar(inSCE, assayName)

Arguments

inSCE

a singleCellExperiment object

assayName

selected assay to compute variable features from

Value

inSCE updated singleCellExperiment object that contains variable feature metrics in rowData

Author(s)

Irzam Sarfraz

Examples

data(sce_chcl, package = "scds")
sce_chcl <- scran_modelGeneVar(sce_chcl, "counts")

[Package singleCellTK version 2.0.0 Index]