seuratFindHVG {singleCellTK} | R Documentation |
seuratFindHVG Find highly variable genes and store in the input sce object
seuratFindHVG(inSCE, useAssay, hvgMethod = "vst", hvgNumber = 2000)
inSCE |
(sce) object to compute highly variable genes from and to store back to it |
useAssay |
Normalized assay inside the SCE object to use for hvg computation. |
hvgMethod |
selected method to use for computation of highly variable genes. One of 'vst', 'dispersion', or 'mean.var.plot'. Default |
hvgNumber |
numeric value of how many genes to select as highly variable. Default |
Updated SingleCellExperiment
object with highly variable genes computation stored
data(scExample, package = "singleCellTK") ## Not run: sce <- seuratNormalizeData(sce, useAssay = "counts") sce <- seuratFindHVG(sce, useAssay = "counts") ## End(Not run)