plotDEGViolin {singleCellTK} | R Documentation |
plot the violin plot to show visualize the expression distribution of DEGs identified by differential expression analysis
plotDEGViolin( inSCE, useResult, threshP = FALSE, labelBy = NULL, nrow = 6, ncol = 6, defaultTheme = TRUE, isLogged = TRUE, check_sanity = TRUE )
inSCE |
SingleCellExperiment inherited object.
|
useResult |
character. A string specifying the |
threshP |
logical. Whether to plot threshold values from adaptive
thresholding, instead of using the assay used by |
labelBy |
A single character for a column of |
nrow |
Integer. Number of rows in the plot grid. Default |
ncol |
Integer. Number of columns in the plot grid. Default |
defaultTheme |
Logical scalar. Whether to use default SCTK theme in
ggplot. Default |
isLogged |
Logical scalar. Whether the assay used for the analysis is
logged. If not, will do a |
check_sanity |
Logical scalar. Whether to perform MAST's sanity check
to see if the counts are logged. Default |
A ggplot object of violin plot