seuratSCTransform {singleCellTK} | R Documentation |
seuratSCTransform Runs the SCTransform function to transform/normalize the input data
seuratSCTransform(inSCE, normAssayName = "SCTCounts", useAssay = "counts")
inSCE |
Input SingleCellExperiment object |
normAssayName |
Name for the output data assay. Default |
useAssay |
Name for the input data assay. Default |
Updated SingleCellExperiment object containing the transformed data
data(sce_chcl, package = "scds") sce_chcl <- seuratSCTransform(sce_chcl, "SCTCounts", "counts")