seuratElbowPlot {singleCellTK} | R Documentation |
seuratElbowPlot Computes the plot object for elbow plot from the pca slot in the input sce object
seuratElbowPlot(inSCE, significantPC = NULL, reduction = "pca")
inSCE |
(sce) object from which to compute the elbow plot (pca should be computed) |
significantPC |
Number of significant principal components to plot. This is used to alter the color of the points for the corresponding PCs. If |
reduction |
Reduction to use for elbow plot generation. Either |
plot object
data(scExample, package = "singleCellTK") ## Not run: sce <- seuratNormalizeData(sce, useAssay = "counts") sce <- seuratFindHVG(sce, useAssay = "counts") sce <- seuratScaleData(sce, useAssay = "counts") sce <- seuratPCA(sce, useAssay = "counts") seuratElbowPlot(sce) ## End(Not run)