seuratSCTransform {singleCellTK}R Documentation

seuratSCTransform Runs the SCTransform function to transform/normalize the input data

Description

seuratSCTransform Runs the SCTransform function to transform/normalize the input data

Usage

seuratSCTransform(inSCE, normAssayName = "SCTCounts", useAssay = "counts")

Arguments

inSCE

Input SingleCellExperiment object

normAssayName

Name for the output data assay. Default "SCTCounts".

useAssay

Name for the input data assay. Default "counts".

Value

Updated SingleCellExperiment object containing the transformed data

Examples

data(sce_chcl, package = "scds")
sce_chcl <- seuratSCTransform(sce_chcl, "SCTCounts", "counts")

[Package singleCellTK version 2.0.0 Index]