plotMASTThresholdGenes {singleCellTK} | R Documentation |
Calculate and produce a list of thresholded counts (on natural scale),
thresholds, bins, densities estimated on each bin, and the original data from
thresholdSCRNACountMatrix
plotMASTThresholdGenes( inSCE, useAssay = "logcounts", isLogged = TRUE, check_sanity = TRUE )
inSCE |
SingleCellExperiment object |
useAssay |
character, default |
isLogged |
Logical scalar. Whether the assay used for the analysis is
logged. If not, will do a |
check_sanity |
Logical scalar. Whether to perform MAST's sanity check
to see if the counts are logged. Default |
Plot the thresholding onto the plotting region.
data("mouseBrainSubsetSCE") plotMASTThresholdGenes(mouseBrainSubsetSCE)