reportDiffExp {singleCellTK}R Documentation

Get runDEAnalysis .html report

Description

A function to generate .html Rmarkdown report containing the visualizations of the runDEAnalysis function output

Usage

reportDiffExp(inSCE, study, output_file = NULL, output_dir = NULL)

Arguments

inSCE

A SingleCellExperiment object containing the output from runDEAnalysis function

study

The specific analysis to visualize, used as analysisName argument when running differential expression.

output_file

name of the generated file. If NULL then the output file name will be based on the name of the Rmarkdown template. Default NULL.

output_dir

name of the output directory to save the rendered file. If NULL the file is stored to the current working directory. Default NULL.

Value

.html file


[Package singleCellTK version 2.0.0 Index]