enrichRSCE {singleCellTK} | R Documentation |
enrichR Given a list of genes this function runs the enrichR() to perform Gene enrichment
enrichRSCE(inSCE, glist, db = NULL)
inSCE |
Input SingleCellExperiment object. |
glist |
selected genes for enrichment analysis using enrichR(). Required |
db |
selected database name from the enrichR database list. if NULL then enrichR will be run on all the available databases on the enrichR database. |
enrichRSCE(): returns a data.frame of enrichment terms overlapping in the respective databases along with p-values, z-scores etc.,
## Not run: enrichRSCE(mouseBrainSubsetSCE, "Cmtm5", "GO_Cellular_Component_2017") ## End(Not run)