simplifyEnrichment {simplifyEnrichment} | R Documentation |
Simplify functional enrichment results
simplifyEnrichment(mat, method = "binary_cut", control = list(), plot = TRUE, term = NULL, verbose = TRUE, column_title = qq("@{nrow(mat)} terms clustered by '@{method}'"), ht_list = NULL, ...)
mat |
A similarity matrix. |
method |
Method for clustering the matrix. See |
control |
A list of parameters for controlling the clustering method, passed to |
plot |
Whether to make the heatmap. |
term |
The full name or the description of the corresponding terms. |
column_title |
Column title for the heatmap. |
verbose |
Whether to print messages. |
ht_list |
A list of additional heatmaps added to the left of the similarity heatmap. |
... |
Arguments passed to |
The usage is the same as simplifyGO
, except you need to manually provide the term names by term
argument
if you want to draw the word clouds.
# There is no example NULL