get_treat_info {signatureSearch}R Documentation

Get Treatment Information

Description

Get treatment information including perturbation name, cell type and perturbation type from the reference database

Usage

get_treat_info(refdb)

Arguments

refdb

character(1), one of "lincs", "lincs_expr", "cmap" or "cmap_expr" when using the pre-generated CMAP/LINCS databases or path to the HDF5 file generated with the build_custom_db function. The details is shown in the 'refdb' argument of the qSig function

Value

tibble object with 'pert', 'cell', 'pert_type' columns

Examples

refdb <- system.file("extdata", "sample_db.h5", package="signatureSearch")
treat_info <- get_treat_info(refdb)

[Package signatureSearch version 1.4.6 Index]