detectionPoobEcdf2 {sesame} | R Documentation |
aka pOOBAH2 (p-vals by Out-Of-Band Array Hybridization)
detectionPoobEcdf2(sset, force = FALSE) pOOBAH2(sset, force = FALSE)
sset |
a |
force |
force rerun even if result already exists |
The function takes a SigSet
as input, computes detection p-value
using out-of-band probes empirical distribution and returns a new
SigSet
with an updated pval slot.
The difference between this function and the original pOOBAH is that pOOBAH2 is based on background-subtracted and dyebias corrected signal and do not distinguish the color channel difference.
detection p-value
sset <- makeExampleSeSAMeDataSet() sset <- detectionPoobEcdf(sset) sset <- makeExampleSeSAMeDataSet() sset <- pOOBAH2(sset)