checkLevels {sesame}R Documentation

filter data matrix by factor completeness

Description

filter data matrix by factor completeness

Usage

checkLevels(betas, fc)

Arguments

betas

matrix data

fc

factors

Value

a boolean vector whether there is non-NA value for each tested group for each probe

Examples

se0 = sesameDataGet("MM285.10.tissues")[1:1000,]
se_ok = checkLevels(SummarizedExperiment::assay(se0),
    SummarizedExperiment::colData(se0)$tissue)
sum(se_ok) # number of good probes
se1 = se0[se_ok,]

[Package sesame version 1.8.10 Index]