meanIntensity {sesame}R Documentation

Mean Intensity

Description

The function takes one single SigSet and computes mean intensity of all the in-band measurements. This includes all Type-I in-band measurements and all Type-II probe measurements. Both methylated and unmethylated alleles are considered. This function outputs a single numeric for the mean.

Usage

meanIntensity(sset, mask.use.manifest = TRUE)

Arguments

sset

a SigSet

mask.use.manifest

use mask column in the manifest to filter probes attributes set in extra(sset)

Value

mean of all intensities

Examples

sset <- makeExampleSeSAMeDataSet()
meanIntensity(sset)

[Package sesame version 1.8.10 Index]