qualityMask {sesame}R Documentation

Mask beta values by design quality

Description

Currently quality masking only supports three platforms

Usage

qualityMask(sset, mask.use.manifest = TRUE, mask.use.tcga = FALSE)

Arguments

sset

a SigSet object

mask.use.manifest

use manifest to mask probes

mask.use.tcga

whether to use TCGA masking, only applies to HM450

Value

a filtered SigSet

Examples

sesameDataCache("EPIC") # if not done yet
sset <- sesameDataGet('EPIC.1.LNCaP')$sset
sset.masked <- qualityMask(sset)

[Package sesame version 1.8.10 Index]