checkLevels {sesame} | R Documentation |
filter data matrix by factor completeness
checkLevels(betas, fc)
betas |
matrix data |
fc |
factors |
a boolean vector whether there is non-NA value for each tested group for each probe
se0 = sesameDataGet("MM285.10.tissues")[1:1000,] se_ok = checkLevels(SummarizedExperiment::assay(se0), SummarizedExperiment::colData(se0)$tissue) sum(se_ok) # number of good probes se1 = se0[se_ok,]