plotPhredQuant {seqTools} | R Documentation |
The function creates plots which describes the position wise distribution of phred quantiles in single FASTQ files.
plotPhredQuant(object, i, main, ...)
object |
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i |
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main |
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... |
Other arguments which are passed to the internally called plot function. |
None.
Wolfgang Kaisers
Fastqq-class
basedir <- system.file("extdata",package="seqTools") # setwd(basedir) fq <- fastqq(c("g4_l101_n100.fq.gz", "g5_l101_n100.fq.gz"), k=4, probeLabel=c("g4", "g5")) # plotPhredQuant(fq, 2) # Same plot without x-axis plotPhredQuant(fq,2, xaxt="n")