writeCNProfile {seqCNA} | R Documentation |
SeqCNAInfo-class
object to the specified folder.
The output columns depend on the processing applied on the SeqCNAInfo-class
object.
writeCNProfile(rco, folder)
rco |
A |
folder |
Path to the folder where the table with the output from the |
Nothing is returned from this function. Check the folder
folder for a text file called seqCNA_out.txt
.
David Mosen-Ansorena
data(seqsumm_HCC1143) rco = readSeqsumm(tumour.data=seqsumm_HCC1143) rco = applyFilters(rco, 0, 1, 0, 2, FALSE, plots=FALSE) rco = runSeqnorm(rco, plots=FALSE) rco = runGLAD(rco) rco = applyThresholds(rco, seq(-0.9,4,by=0.9), 1) writeCNProfile(rco, tempdir())