defunct {scran}R Documentation

Defunct functions

Description

Functions that have passed on to the function afterlife. Their successors are also listed.

Usage

trendVar(...)

decomposeVar(...)

testVar(...)

improvedCV2(...)

technicalCV2(...)

makeTechTrend(...)

multiBlockVar(...)

multiBlockNorm(...)

overlapExprs(...)

parallelPCA(...)

Arguments

...

Ignored arguments.

Details

trendVar, decomposeVar and testVar are succeeded by a suite of funtions related to modelGeneVar and fitTrendVar.

improvedCV2 and technicalCV2 are succeeded by modelGeneCV2 and fitTrendCV2.

makeTechTrend is succeeded by modelGeneVarByPoisson.

multiBlockVar is succeeded by the block argument in many of the modelling functions, and multiBlockNorm is no longer necessary.

overlapExprs is succeeded by findMarkers with test.type="wilcox".

parallelPCA has been moved over to the PCAtools package.

Value

All functions error out with a defunct message pointing towards its descendent (if available).

Author(s)

Aaron Lun

Examples

try(trendVar())

[Package scran version 1.18.7 Index]