organism.sce {scPipe} | R Documentation |
organism
from a SingleCellExperiment objectGet or set organism
from a SingleCellExperiment object
organism.sce(object) ## S4 method for signature 'SingleCellExperiment' organism(object) ## S4 replacement method for signature 'SingleCellExperiment' organism(object) <- value
object |
A |
value |
Value to be assigned to corresponding object. |
organism string
Luyi Tian
data("sc_sample_data") data("sc_sample_qc") sce = SingleCellExperiment(assays = list(counts = as.matrix(sc_sample_data))) organism(sce) = "mmusculus_gene_ensembl" gene_id_type(sce) = "ensembl_gene_id" QC_metrics(sce) = sc_sample_qc demultiplex_info(sce) = cell_barcode_matching UMI_dup_info(sce) = UMI_duplication organism(sce)