plot_UMI_dup {scPipe} | R Documentation |
Plot the UMI duplication frequency.
plot_UMI_dup(sce, log10_x = TRUE)
sce |
a |
log10_x |
whether to use log10 scale for x axis |
a line chart of the UMI duplication frequency
data("sc_sample_data") data("sc_sample_qc") sce = SingleCellExperiment(assays = list(counts = as.matrix(sc_sample_data))) organism(sce) = "mmusculus_gene_ensembl" gene_id_type(sce) = "ensembl_gene_id" QC_metrics(sce) = sc_sample_qc demultiplex_info(sce) = cell_barcode_matching UMI_dup_info(sce) = UMI_duplication plot_UMI_dup(sce)