rand_index {scGPS} | R Documentation |
Comparing clustering results Function for calculating randindex (adapted from the function by Steve Horvath and Luohua Jiang, UCLA, 2003)
rand_index(tab, adjust = TRUE)
tab |
a table containing different clustering results in rows |
adjust |
a logical of whether to use the adjusted rand index |
a rand_index value
Quan Nguyen and Michael Thompson, 2018-05-11
day5 <- day_5_cardio_cell_sample mixedpop2 <-new_summarized_scGPS_object(ExpressionMatrix = day5$dat5_counts, GeneMetadata = day5$dat5geneInfo, CellMetadata = day5$dat5_clusters) cluster_all <-clustering(object=mixedpop2) rand_index(table(unlist(cluster_all$list_clusters[[1]]), cluster_all$cluster_ref))