Modification Editor
Introduction
SearchGUI allows you to inspect implemented modifications as well as manage user modifications in a user friendly way. If
you encounter any difficulty with modifications in SearchGUI, please contact the developers.
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Default Modifications
The default modifications are basically the ones implemented in the OMSSA search engine. Note that all modifications are not
compatible with X!Tandem and can result in nonsense matches. For instance, X!Tandem does not support modification at specific
amino acids on peptide termini.
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User Modifications
User modifications can be implemented very easily in SearchGUI. Note that user modifications will be available in other
instances of SearchGUI and PeptideShaker.
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