SangerRead-class-generateReportSR {sangeranalyseR} | R Documentation |
A SangerRead method which generates final reports of the SangerRead instance.
## S4 method for signature 'SangerRead' generateReportSR(object, outputDir, navigationContigFN = NULL, navigationAlignmentFN = NULL)
object |
A SangerRead S4 instance. |
outputDir |
The output directory of the generated HTML report. |
navigationContigFN |
The internal parameter passed to HTML report. Users should not modify this parameter on their own. |
navigationAlignmentFN |
The internal parameter passed to HTML report. Users should not modify this parameter on their own. |
The output absolute path to the SangerRead's HTML file.
data("sangerReadFData") ## Not run: generateReportSR(sangerReadFData) ## End(Not run)