measures {rnaSeqMap} | R Documentation |
Various measures to find differential expression.
ks_test(dd) diff_area(dd, cconst) diff_derivative_area(dd, cconst) qq_plot(dd) qq_derivative_plot(dd) pp_plot(dd) pp_derivative_plot(dd) hump_diff1(dd) hump_diff2 (dd)
dd |
a matrix with 2 columns for samples and rows for nucleotides, containing coverage data (like from BED files) |
cconst |
NULL default |
The measures give various assesment of the difference between two sequencing samples shapes. Full description will follow in the paper.
Anna Lesniewska,Michal Okoniewski
# if (xmapConnected()) # { # ks_test(dd) # }