parseGff3 {rnaSeqMap} | R Documentation |
Parses gff3 file into genes, transcripts and exons.
parseGff3(filegff, fileg="genes.txt", filet="transcripts.txt", filee="exons.txt", nofiles=FALSE)
filegff |
Input file in GFF3 format |
fileg |
Filename for output: genes |
filet |
Filename for output: transcripts |
filee |
Filename for output: exons |
nofiles |
Flag: just optput list, no files |
List with elements "genes", "transcripts", "exons" with appropriate tables.
Michal Okoniewski, Anna Lesniewska
# if (xmapConnected()) # { # parseGff3("Athaliana.gff3") # }