plotGeneCoverage {rnaSeqMap} | R Documentation |
Various plots of genomic coverage for experiments.
plotGeneCoverage(gene_id, ex) plotRegionCoverage(chr, start, end, strand, ex) plotExonCoverage (exon_id,ex) plotCoverageHistogram (chr,start,end,strand,ex, skip) plotGeneExonCoverage(gene_id, ex) plotSI(chr,start,end,strand, exp1, exp2 )
ex |
vectors of experiment numbers to plot |
exp1, exp2 |
experiment numbers for splicing index |
gene_id |
Ensembl gene ID |
exon_id |
Ensembl exon ID |
chr |
Chromosome |
start |
Start position of region on the chromosome |
end |
Start position of region on the chromosome |
strand |
Strand |
skip |
size of the bucket in histogram |
Michal Okoniewski, Anna Lesniewska
# if (xmapConnected()) # { # plotGeneCoverage( "ENSG00000144567", 1:3) # plotting FAM134A for experiments 1,2,3 # plotRegionCoverage( 2, 220040947, 220050201, 1, 1:3 ) # the same, using coordinates # }