libScales {riboSeqR} | R Documentation |
This function applies the library scaling factor estimation methods implemented in the baySeq package to ribosome footprint data and (if present) the associated RNA-Seq data. The library scaling factors can then be used in downstream analyses.
libScales(rC, riboDat, lengths, frames, method = "edgeR")
rC |
A |
riboDat |
A |
lengths |
Lengths of ribosome footprints to inform count data. |
frames |
Frames of ribosome footprints (relative to coding start site). If omitted, all frames are used. |
method |
Method to be used for scaling factor estimation. See |
A list object containing
riboLS |
Ribosome footprint library scaling factors. |
rnaLS |
RNA-Seq library scaling factors. |
Thomas J. Hardcastle