get_rmdl {recountmethylation} | R Documentation |
Uses RCurl to recursively download latest H5SE and HDF5 data objects from the server. This is currently wrapped in the getdb() functions.
get_rmdl( which.class = c("rg", "gm", "gr", "test"), which.type = c("h5se", "h5"), fn = NULL, dfp = "downloads", url = "https://recount.bio/data/", show.files = FALSE, download = TRUE, verbose = TRUE, sslver = FALSE )
which.class |
Either "rg", "gm", "gr", or "test" for RGChannelSet, MethylSet, GenomicRatioSet, or 2-sample subset (default "test"). |
which.type |
Either "h5se" for an HDF5-SummarizedExperiment (default) or "h5" for an HDF5 database. |
fn |
Name of file on server to download (optional, default NULL). |
dfp |
Download destination directory (default "downloads"). |
url |
The server URL to locate files for download. |
show.files |
Whether to print server file data to console (default FALSE). |
download |
Whether to download (TRUE) or return queried filename (FALSE). |
verbose |
Whether to return verbose messages. |
sslver |
Whether to use server certificate check (default FALSE). |
New filepath to dir with downloaded data.
servermatrix(), getURL(), loadHDF5SummarizedExperiment(), h5ls()