locate_url_ann {recount3} | R Documentation |
Given a expression feature type
, organism
and annotation
, this
function constructs the URL (or file path) to access a recount3
annotation file. This function is used by create_rse_manual()
.
locate_url_ann( type = c("gene", "exon"), organism = c("human", "mouse"), annotation = annotation_options(organism), recount3_url = getOption("recount3_url", "http://duffel.rail.bio/recount3") )
type |
A |
organism |
A |
annotation |
A |
recount3_url |
A |
A character(1)
with the URL (or file path) to access the
recount3 annotation file.
Other internal functions for accessing the recount3 data:
annotation_ext()
,
create_rse_manual()
,
file_retrieve()
,
locate_url()
,
project_homes()
,
read_counts()
,
read_metadata()
locate_url_ann() locate_url_ann(organism = "mouse")