menetRNASeqMouseLiver {rain}R Documentation

Time courses of gene expression in mouse liver

Description

Temporal gene expression profiling in mouse liver, measured by high throughput sequencing. Profiles shows the changes in gene expression in mice under 12 h light: 12 h dark conditions. Data were originally published by Menet et. al. (2012) under Creative Commons License 3.0: http://creativecommons.org/licenses/by/3.0/. The data are available in the public domain at GEO http://www.ncbi.nlm.nih.gov/geo/ as Dataset entry GSE36916.

Usage

menetRNASeqMouseLiver

Format

a data.frame containing the normalized expression values for each gene and time point in two repeats. First number shows the time of measurement in 'Zeitgeber Time' (ZT) whereas ZT_0 is the time of light on. The second number specifies the biological replicate.

Author(s)

Paul F. Thaben paul.thaben@charite.de

References

Menet, J. S., Rodriguez, J., Abruzzi, K. C., & Rosbash, M. (2012). Nascent-Seq reveals novel features of mouse circadian transcriptional regulation. eLife, 1(0), e00011. doi:10.7554/eLife.00011


[Package rain version 1.24.0 Index]