plot_adapter_content {qckitfastq}R Documentation

Creates a bar plot of the top 5 most present adapter sequences.

Description

Creates a bar plot of the top 5 most present adapter sequences.

Usage

plot_adapter_content(ac_sorted, output_file = NA)

Arguments

ac_sorted

Sorted table of adapters and counts.

output_file

File to save data frame to. Default NA.

Value

Barplot of top 5 most frequent adapter sequences.

Examples

if(.Platform$OS.type != "windows") {
infile <- system.file("extdata", "test.fq.gz", package = "qckitfastq")
ac_sorted <- adapter_content(infile)
plot_adapter_content(ac_sorted)
}

[Package qckitfastq version 1.6.0 Index]