plot_read_content {qckitfastq} | R Documentation |
Plot the per position nucleotide content.
plot_read_content(read_content, output_file = NA)
read_content |
Data frame produced by read_content function. |
output_file |
File to save plot to. Will not write to file if NA. Default NA. |
ggplot line plot of all nucleotide content inclding A, T, G, C and N
infile <- system.file("extdata", "10^5_reads_test.fq.gz", package = "qckitfastq") fseq <- seqTools::fastqq(infile,k=6) read_content <- read_content(fseq) plot_read_content(read_content)