GC_content {qckitfastq} | R Documentation |
Calculates GC content percentage for each read in the dataset.
GC_content(infile, output_file = NA)
infile |
the object that is the path to the FASTQ file |
output_file |
File to write results to. Default NA. |
Data frame with read ID and GC content of each read.
infile <- system.file("extdata", "10^5_reads_test.fq.gz", package = "qckitfastq") head(GC_content(infile))