findxnextneighbors {pwOmics}R Documentation

Find next neighbors of transcription factors in identified pathways. Produces a list of x next neighbors for each transcription factor in the pathway.

Description

Find next neighbors of transcription factors in identified pathways.

Produces a list of x next neighbors for each transcription factor in the pathway.

Usage

findxnextneighbors(data_omics, pws_morex_TFs, pwxTFs, order_neighbors)

Arguments

data_omics

OmicsData object.

pws_morex_TFs

list of transcription factors in identified pathways.

pwxTFs

numeric variable of pathway currently investigated (from pws_morexTFs).

order_neighbors

integer specifiying the order of the neighborhood: order 1 is TF plus its immediate neighbors.

Value

list of x next neighbors for each TF in the pathway.


[Package pwOmics version 1.22.0 Index]