discardLowCoveragePSIvalues {psichomics} | R Documentation |
Remove alternative splicing quantification values based on coverage
discardLowCoveragePSIvalues( psi, minReads = 10, vasttoolsScoresToDiscard = c("VLOW", "N") )
psi |
Data frame or matrix: alternative splicing quantification |
minReads |
Currently this argument does nothing |
vasttoolsScoresToDiscard |
Character: if you are using inclusion levels
from VAST-TOOLS, filter the data based on quality scores for read coverage,
e.g. use |
Alternative splicing quantification data with missing values for any values with insufficient coverage