parseSplicingEvent {psichomics} | R Documentation |
Parse alternative splicing event identifier
parseSplicingEvent( event, char = FALSE, pretty = FALSE, extra = NULL, coords = FALSE, data = NULL )
event |
Character: event identifier |
char |
Boolean: return character vector instead of list with parsed values? |
pretty |
Boolean: return a prettier name of the event identifier? |
extra |
Character: extra information to add (such as species and
assembly version); only used if |
coords |
Boolean: display extra coordinates regarding the alternative
and constitutive regions of alternative splicing events? Only used if
|
data |
Matrix or data frame: alternative splicing information |
Data.frame containing type of event, chromosome, strand, gene and position of alternative splicing events or character with that same information (depending on what is available)
events <- c( "A3SS_15_+_63353138_63353912_63353397_TPM1", "A3SS_11_-_61118463_61117115_61117894_CYB561A3", "A5SS_21_+_48055675_48056459_48056808_PRMT2", "A5SS_1_-_1274742_1274667_1274033_DVL1", "AFE_9_+_131902430_131901928_131904724_PPP2R4", "AFE_5_-_134686513_134688636_134681747_H2AFY", "ALE_12_+_56554104_56554410_56555171_MYL6", "ALE_8_-_38314874_38287466_38285953_FGFR1", "SE_9_+_6486925_6492303_6492401_6493826_UHRF2", "SE_19_-_5218431_5216778_5216731_5215606_PTPRS", "MXE_15_+_63335142_63335905_63336030_63336226_63336351_63349184_TPM1", "MXE_17_-_74090495_74087316_74087224_74086478_74086410_74085401_EXOC7") parseSplicingEvent(events)