parseMatsEvent {psichomics} | R Documentation |
Parse alternative splicing events from MATS
parseMatsEvent(event, event_type)
event |
Data frame row: MATS splicing event |
event_type |
Character: Type of event to parse (see details) |
The following event types can be parsed:
SE: Skipped exon
MXE: Mutually exclusive exons
RI:Retained intron
A3SS: Alternative 3' splice site
A5SS: Alternative 5' splice site
List containing the event attributes and junctions
# MATS event (alternative 3' splice site) event <- read.table(text = " 2 ENSG00000166012 TAF1D chr11 - 93466515 93466671 93466515 93466563 93467790 93467826 5 ENSG00000166012 TAF1D chr11 - 93466515 93466671 93466515 93466585 93467790 93467826 6 ENSG00000166012 TAF1D chr11 - 93466515 93466585 93466515 93466563 93467790 93467826 ") psichomics:::parseMatsEvent(event, "A3SS")