alluvialMat {projectR} | R Documentation |
Function to provide alluvial matrix for generating alluvial plot
alluvialMat( projection, annotations, annotationName = "Cell type", annotationType = "Cell", plot = TRUE, minPropExplained = 0.75 )
projection |
a projection generated from projectR, ensure that full = TRUE while generating projection |
annotations |
a character vector of annotations for the data |
annotationName |
a charcter fof collective name of the annotations, default is "Cell type" |
annotationType |
a character indicating the type of data annotated, default is "Cell" |
plot |
logical indicating whether to return the alluvial plot, default is TRUE |
minPropExplained |
threshold for minimum proportion of samples that correspond to a pattern to be used for plotting |
A matrix to generate alluvial plots
projection <- projectR(data=p.ESepiGen4c1l$mRNA.Seq,loadings=AP.RNAseq6l3c3t$Amean, dataNames = map.ESepiGen4c1l[["GeneSymbols"]], full = TRUE) alluvialMat(projection,pd.ESepiGen4c1l$Condition)