dea_evalPlot_curve {pipeComp}R Documentation

dea_evalPlot_curve

Description

dea_evalPlot_curve

Usage

dea_evalPlot_curve(
  res,
  scales = "free",
  agg.by = NULL,
  agg.fn = mean,
  xlim = c(NA, NA),
  colourBy = "method",
  shapeBy = NULL,
  pointsize = 4
)

Arguments

res

Aggregated results of the DEA pipeline

scales

Passed to 'facet_grid'

agg.by

Aggregate results by these columns (default no aggregation)

agg.fn

Function for aggregation (default mean)

xlim

Optional vector of x limits

colourBy

Name of column by which to colour

shapeBy

Name of column determining the shape of the points. If omitted, the shape will indicate whether the nominal FDR is below or equal the real FDR.

pointsize

Size of the points

Value

A ggplot.

Examples

data("exampleDEAresults", package="pipeComp")
dea_evalPlot_curve(exampleDEAresults, agg.by=c("sva.method"))

[Package pipeComp version 1.0.0 Index]