collapseDataset {phantasus} | R Documentation |
collapseDataset
performs a collapse action on expression set
collapseDataset( es, isRows = TRUE, selectOne = FALSE, fn, fields, removeEmpty = TRUE )
es |
Expression set |
isRows |
Work with rows. False if columns (default True - row mode) |
selectOne |
select best match or merge duplicates |
fn |
select/merge function |
fields |
fields to unique on |
removeEmpty |
remove unannotated genes |
Nothing. Collapsed dataset will be assigned to es in environment
## Not run: es <- getGSE('GSE53986')[[1]] collapseDataset(es, isRows = TRUE, selectOne = TRUE, fn = mean, fields = c('Gene ID', 'Gene symbol')) ## End(Not run)