OmicsCateg-class {pathwayPCA}R Documentation

An S4 class for categorical responses within an OmicsPathway object

Description

This creates the OmicsCateg class which extends the OmicsPathway master class.

Slots

assayData_df

An N \times p data frame with named columns.

pathwayCollection

A list of known gene pathways with three or four elements:

response

A factor vector of length N: the dependent variable of a generalized linear regression exercise. Currently, we support binary factors only. We expect to extend support to n-ary responses in the next package version.

See Also

OmicsPathway, CreateOmics


[Package pathwayPCA version 1.6.3 Index]