SubsetOmicsSurv {pathwayPCA} | R Documentation |
OmicsSurv
Object"Get" or "Set" the values of the eventTime_num
or
eventObserved_lgl
slots of an object of class OmicsSurv
.
getEventTime(object, ...) getEventTime(object) <- value getEvent(object, ...) getEvent(object) <- value ## S4 method for signature 'OmicsSurv' getEventTime(object, ...) ## S4 replacement method for signature 'OmicsSurv' getEventTime(object) <- value ## S4 method for signature 'OmicsSurv' getEvent(object, ...) ## S4 replacement method for signature 'OmicsSurv' getEvent(object) <- value
object |
An object of class |
... |
Dots for additional internal arguments (currently unused). |
value |
The replacement object to be assigned to the specified slot. |
These functions can be useful to set or extract the event time or
death indicator from an OmicsSurv
object. However, we recommend
that users simply create a new, valid OmicsSurv
object instead of
modifying an existing one. The validity of edited objects is checked with
the ValidOmicsSurv
function.
The "get" functions return the objects in the slots specified:
getEventTime
returns the eventTime_num
vector object and
getEvent
returns the eventObserved_lgl
vector object. These
functions can extract these values from any valid OmicsSurv
object.
The "set" functions enable the user to edit or replace objects in the
eventTime_num
or eventObserved_lgl
slots for any
OmicsSurv
object, provided that the new values do not violate the
validity check of an OmicsSurv
object. See "Details" for more
information.
data("colonSurv_df") data("colon_pathwayCollection") colon_Omics <- CreateOmics( assayData_df = colonSurv_df[, -(2:3)], pathwayCollection_ls = colon_pathwayCollection, response = colonSurv_df[, 1:3], respType = "survival" ) getEventTime(colon_Omics) getEvent(colon_Omics)