packMatches {packFinder}R Documentation

Sample packFinder Output

Description

A sample output from packSearch with cluster information. This dataframe is in the format produced by coercing a link[GenomicRanges:GRanges-class]{GRanges} object to a dataframe: data.frame(GRanges).

Usage

data(packMatches)

Format

A dataframe of 9 obs. and 7 variables.

Details

Was obtained from running packSearch on the Arabidopsis thaliana chromosome 3 reference sequence, followed by clustering using packClust. Contains the following features:

The dataset was generated as in the example below.

See Also

packSearch, data.frame, arabidopsisThalianaRefseq

Examples

data(arabidopsisThalianaRefseq)

packMatches <- packSearch(
    Biostrings::DNAString("CACTACAA"),
    arabidopsisThalianaRefseq,
    elementLength = c(300, 3500),
    tsdLength = 3
)


[Package packFinder version 1.2.0 Index]