getBaseProfile {oligo}R Documentation

Compute and plot nucleotide profile.

Description

Computes and, optionally, lots nucleotide profile, describing the sequence effect on intensities.

Usage

getBaseProfile(coefs, probeLength = 25, plot = FALSE, ...)

Arguments

coefs

affinity spline coefficients.

probeLength

length of probes

plot

logical. Plots profile?

...

arguments to be passed to matplot.

Value

Invisibly returns a matrix with estimated effects.


[Package oligo version 1.54.1 Index]