fqName {ngsReports} | R Documentation |
Return the Underlying Fastq File Names from FastqcData* Objects
fqName(object) ## S4 method for signature 'ANY' fqName(object) ## S4 method for signature 'FastqcData' fqName(object) ## S4 method for signature 'FastqcDataList' fqName(object) fqName(object) <- value ## S4 replacement method for signature 'FastqcData' fqName(object) <- value ## S4 replacement method for signature 'FastqcDataList' fqName(object) <- value
object |
An object of class FastqcData or FastqcDataList |
value |
Replacement value for fqName |
Returns the names of the Fastq files the FastQC report was generated from, without any preceding directories.
# Get the files included with the package packageDir <- system.file("extdata", package = "ngsReports") fl <- list.files(packageDir, pattern = "fastqc.zip", full.names = TRUE) # Load the FASTQC data as a FastqcDataList object fdl <- FastqcDataList(fl) fqName(fdl)