scoreSmoothing {netSmooth}R Documentation

Calculate a score for a smoothing result, for picking the best alpha value

Description

Calculate a score for a smoothing result, for picking the best alpha value

Usage

scoreSmoothing(x, method = c("entropy", "robustness"), is.counts = TRUE, ...)

Arguments

x

the network-smoothed expression matrix

method

the scoring method. 'entropy' calculates shannon entropy in a 2D PCA of the data. 'robustness' performs robsut clustering and reports the proportion of samples in robust clusters

Value

the score


[Package netSmooth version 1.10.0 Index]