fetchPathwayDefinitions {netDx} | R Documentation |
fetch pathway definitions from downloads.baderlab.org
fetchPathwayDefinitions(month = NULL, year = NULL, verbose = FALSE)
month |
(char) month of pathway definition file. Must be textual name (e.g. "January","April"). If NULL, gets the latest release |
year |
(numeric) year of pathway definition file. Must be in yyyy format (e.g. 2018). |
verbose |
(logical) print messages |
Fetches genesets compiled from multiple curated pathway databases. Downloaded from: http://download.baderlab.org/EM_Genesets/ The file contains pathways from HumanCyc, NetPath, Reactome, NCI Curated Pathways and mSigDB. For details see Merico D, Isserlin R, Stueker O, Emili A and GD Bader. (2010). PLoS One. 5(11):e13984.
(char) Path to local cached copy of GMT file or initial download is required
fetchPathwayDefinitions() fetchPathwayDefinitions("January",2018) fetchPathwayDefinitions()