plot_tSNE {netDx}R Documentation

Plot tSNE

Description

Plot tSNE

Usage

plot_tSNE(psn, pheno)

Arguments

psn

(matrix) Patient similarity network represented as adjacency matrix (symmetric). Row and column names are patient IDs. Note that NA values will be replaced by very small number (effectively zero).

pheno

(data.frame) Patient labels. ID column is patient ID and STATUS is patient label of interest. tSNE will colour-code nodes by patient label.

Details

Plots tSNE of patient similarity network using Rtsne

Value

(Rtsne) output of Rtsne call. Side effect of tSNE plot


[Package netDx version 1.1.4 Index]