writeQueryFile {netDx}R Documentation

Wrapper to write GeneMANIA query file

Description

Wrapper to write GeneMANIA query file

Usage

writeQueryFile(qSamps, incNets = "all", numReturn = 1L, outFile,
  orgName = "predictor")

Arguments

qSamps

(char) vector of patient IDs in query

incNets

(char) vector of networks to include in this analysis (features/pathway names). Useful for subset-based feature selection

numReturn

(integer) number of patients to return in ranking file

outFile

(char) path to output file

orgName

(char) organism name

Value

No value. Side effect of writing the query file to outFile

Examples

data(pheno)
writeQueryFile(pheno$ID[seq_len(5)], 'all',nrow(pheno), 'myquery.txt')

[Package netDx version 1.1.4 Index]