makeMergedSmapData {nanotatoR}R Documentation

Merges Bionano SV files to one common SV file

Description

Merges Bionano SV files to one common SV file

Usage

makeMergedSmapData(path, pattern, outpath, fname,
  dbOutput = c("dataframe", "text"))

Arguments

path

character. Path to the solo files.

pattern

character. file name pattern for solo files.

outpath

character. path for output file if dbOutput = text.

fname

character. filename if dbOutput = text.

dbOutput

character. Output type. Default text and dataframe.

Value

Text file containing all the solo SMAP files.

Examples

path <- system.file("extdata", "Bionano_config/", package = "nanotatoR")
pattern <- "_hg19.txt"
mergedSmap <- makeMergedSmapData(path, pattern, dbOutput = "dataframe")

[Package nanotatoR version 1.6.0 Index]