pbFlatten {muscat} | R Documentation |
Flattens a pseudobulk SingleCellExperiment
as returned by aggregateData
such that all cell subpopulations
are represented as a single assay.
pbFlatten(pb, normalize = TRUE)
pb |
a pseudobulk |
normalize |
logical specifying whether to compute a |
data(sce) library(SingleCellExperiment) pb_stack <- aggregateData(sce) (pb_flat <- pbFlatten(pb_stack)) ncol(pb_flat) == ncol(pb_stack)*length(assays(pb_stack))