bed_to_granges {multicrispr} | R Documentation |
Read bedfile into GRanges
bed_to_granges( bedfile, genome, txdb = NULL, do_order = TRUE, plot = TRUE, verbose = TRUE )
bedfile |
file path |
genome |
string: UCSC genome name (e.g. 'mm10') |
txdb |
NULL (default) or |
do_order |
TRUE (default) or FALSE: order on seqnames and star? |
plot |
TRUE (default) or FALSE: plot karyogram? |
verbose |
TRUE (default) or FALSE |
char_to_granges
, genes_to_granges
bedfile <- system.file('extdata/SRF.bed', package = 'multicrispr') bsgenome <- BSgenome.Mmusculus.UCSC.mm10::BSgenome.Mmusculus.UCSC.mm10 (gr <- bed_to_granges(bedfile, genome='mm10'))