estimateDispersionsForCellDataSet {monocle}R Documentation

Helper function to estimate dispersions

Description

Helper function to estimate dispersions

Usage

estimateDispersionsForCellDataSet(cds, modelFormulaStr, relative_expr,
  min_cells_detected, removeOutliers, verbose = FALSE)

Arguments

cds

a CellDataSet that contains all cells user wants evaluated

modelFormulaStr

a formula string specifying the model to fit for the genes.

relative_expr

Whether to transform expression into relative values

min_cells_detected

Only include genes detected above lowerDetectionLimit in at least this many cells in the dispersion calculation

removeOutliers

a boolean it determines whether or not outliers from the data should be removed

verbose

Whether to show detailed running information.


[Package monocle version 2.18.0 Index]