cellPairwiseDistances {monocle}R Documentation

Get the matrix of pairwise distances between cells

Description

Retrieves a matrix capturing distances between each cell used during cell ordering.

Usage

cellPairwiseDistances(cds)

Arguments

cds

expression data matrix for an experiment

Value

A square, symmetric matrix containing the distances between each cell in the reduced-dimensionality space.

Examples

## Not run: 
D <- cellPairwiseDistances(HSMM)

## End(Not run)

[Package monocle version 2.18.0 Index]