addCellType {monocle} | R Documentation |
adds a cell type to a pre-existing CellTypeHierarchy and produces a function that accepts expression data from a CellDataSet. When the function is called on a CellDataSet a boolean vector is returned that indicates whether each cell is or is not the cell type that was added by addCellType.
addCellType(cth, cell_type_name, classify_func, parent_cell_type_name = "root")
cth |
The CellTypeHierarchy object |
cell_type_name |
The name of the new cell type. Can't already exist in cth |
classify_func |
A function that returns true when a cell is of the new type |
parent_cell_type_name |
If this cell type is a subtype of another, provide its name here |