titrationResponse {miRcomp} | R Documentation |
This function determines
titrationResponse(object1, qcThreshold1, object2=NULL, qcThreshold2=NULL, commonFeatures=TRUE, label1=NULL, label2=NULL)
object1 |
a list containing two elements: ct (the expression estiamtes) and qc (quality scores) |
qcThreshold1 |
a numeric threshold corresponding to object1$qc below which values are considered low quality. |
object2 |
an optional second list of the same format as object1, used to compare two methods. |
qcThreshold2 |
a numeric threshold corresponding to object2$qc below which values are considered low quality. |
commonFeatures |
if TRUE and object2 is non-NULL, only high quality non-NA features in common between both objects are used. |
label1 |
optional label corresponding to object 1 to be used in plotting. |
label2 |
optional label corresponding to object 2 to be used in plotting. |
A table listing the number of features showing a monotone titration response and a figure showing the proportion of features showing a monotone titration response vs the difference in pure sample expression.
Matthew N. McCall
data(lifetech) titrationResponse(object1=lifetech,qcThreshold1=1.25) data(qpcRdefault) titrationResponse(object1=lifetech,qcThreshold1=1.25, object2=qpcRdefault,qcThreshold2=0.99)