assessVersion {miRNAmeConverter} | R Documentation |
This function detects the most likely miRBase version of a given miRNA set. Assess miRBase version
This function detects the most likely miRBase version of a given miRNA set.
assessVersion(this, miRNAs, verbose = FALSE) ## S4 method for signature 'MiRNANameConverter' assessVersion(this, miRNAs, verbose = FALSE)
this |
Object of class 'MiRNANameConverter' |
miRNAs |
A character vector of miRNA names |
verbose |
A boolean to either show more (TRUE) or less information (FALSE) |
This function takes a set of miRNA names and detects the most likely miRBase
version of this given set of 'miRNAs'. First all miRNAs will be checked for
validity (if they are actual miRNA names checkMiRNAName
and the set
that passes the check will be further processed.
A data frame with two columns: version and frequency (decreasing order by frequency, version) + version: miRBase version + frequency: the number of valid miRNAs that could be assigned to the version respectively
MiRNANameConverter
: Method for assessing the most likely miRBase
version that a given set of miRNA names is from.
Stefan Haunsberger
nc = MiRNANameConverter(); # Instance of class 'MiRNANameConverter' assessVersion(nc, miRNAs = c("hsa-miR-140", "hsa-miR-125a"))