plotSampleIntensities {methylumi} | R Documentation |
The Illumina methylation platforms all show a significant dye bias. The plotSampleIntensities method shows the density plots for the two channels allowing direct visualization of the effect.
plotSampleIntensities(x,beta.cuts,s)
x |
an object of class MethyLumi or a subclass |
beta.cuts |
cutoffs for low and high beta values |
s |
sample number to plot |
data(mldat) plotSampleIntensities(mldat,s=1)