calculatecountneg {methylMnM} | R Documentation |
Call C programs to R for calculate MRE-seq "-" direction count of each bin.
calculatecountneg(data2, data3, cpg2, cpg3, datalength, cpglength, count=rep(0,cpglength))
data2 |
Start position of each tag. |
data3 |
End position of each tag. |
cpg2 |
Start position of each bin. |
cpg3 |
End position of each bin. |
datalength |
The number of tags |
cpglength |
The number of bins |
count |
Count of MRE-seq "-" direction of each bin. |
Count of MRE-seq "-" direction of each bin.
Yan Zhou, Bo Zhang, Nan Lin, BaoXue Zhang and Ting Wang
data<-matrix( 1:400, nrow=200 ) cpg<-matrix( 1:40, nrow=20) cpg[,1]<-seq(0,380,length=20) cpg[,2]<-seq(20,400,length=20) f <-calculatecountneg(data[,1], data[,2], cpg[,1], cpg[,2], length(data[,1]), length(cpg[,2]), count=rep(0,length(cpg[,2])))