geneSim {meshes} | R Documentation |
semantic similarity between two gene vector
geneSim(geneID1, geneID2 = NULL, measure = "Wang", combine = "BMA", semData)
geneID1 |
gene ID vector |
geneID2 |
gene ID vector |
measure |
one of "Wang", "Resnik", "Rel", "Jiang" and "Lin" |
combine |
One of "max", "avg", "rcmax", "BMA" methods, for combining semantic similarity scores of multiple DO terms associated with gene/protein. |
semData |
gene annotation data for semantic measurement |
score matrix
Guangchuang Yu
## hsamd <- meshdata("MeSH.Hsa.eg.db", category='A', computeIC=T, database="gendoo") data(hsamd) geneSim("241", "251", semData=hsamd, measure="Wang", combine="BMA")