smoothQuantileNormalization {lumi}R Documentation

Smooth quantile normalization

Description

Smooth quantile normalization with a reference sample

Usage

smoothQuantileNormalization(dataMatrix, ref = NULL, adjData=NULL, logMode = TRUE, bandwidth = NULL, degree = 1, verbose = FALSE, ...)

Arguments

dataMatrix

a matrix of microarray intensity data

ref

a vector of reference sample intensity, which matches the dataMatrix

adjData

data to be adjusted based on the ref and dataMatrix distribution

logMode

whether perform the analysis in log2 scale

bandwidth

a parameter used by locpoly

degree

a parameter used by locpoly

verbose

whether print the processing sample names

...

other parameters used by locpoly

Value

a data matrix with intensity normalized.

Author(s)

Pan DU

See Also

See Also adjColorBias.quantile


[Package lumi version 2.42.0 Index]