show.BioVector {kebabs} | R Documentation |
Display methods for BioVector, SpectrumKernel, MismatchKernel, GappyPairKernel, MotifKernel, SymmetricPairKernel, ExplicitRepresentationDense, ExplicitRepresentationSparse, PredictionProfile, CrossValidationResult, ModelSelectionResult, SVMInformation and KBModel objects
show.BioVector(object) ## S4 method for signature 'PredictionProfile' show(object) ## S4 method for signature 'SpectrumKernel' show(object) ## S4 method for signature 'MismatchKernel' show(object) ## S4 method for signature 'MotifKernel' show(object) ## S4 method for signature 'GappyPairKernel' show(object) ## S4 method for signature 'SymmetricPairKernel' show(object) ## S4 method for signature 'ExplicitRepresentationDense' show(object) ## S4 method for signature 'ExplicitRepresentationSparse' show(object) ## S4 method for signature 'CrossValidationResult' show(object) ## S4 method for signature 'ModelSelectionResult' show(object) ## S4 method for signature 'SVMInformation' show(object) ## S4 method for signature 'KBModel' show(object) ## S4 method for signature 'ROCData' show(object)
object |
object of class BioVector, PredictionProfile, SpectrumKernel, MismatchKernel, GappyPairKernel, MotifKernel, SymmetricPairKernel, ExplicitRepresentation, ExplicitRepresentationSparse, PredictionProfile, CrossValidationResult, ModelSelectionResult, SVMInformation or KBModel to be displayed |
show
displays on overview of the selected object.
show
: show returns an invisible NULL
Johannes Palme <kebabs@bioinf.jku.at>
http://www.bioinf.jku.at/software/kebabs
J. Palme, S. Hochreiter, and U. Bodenhofer (2015) KeBABS: an R package
for kernel-based analysis of biological sequences.
Bioinformatics, 31(15):2574-2576, 2015.
DOI: 10.1093/bioinformatics/btv176.
## load coiled coil data data(CCoil) ## show amino acid sequences ccseq ## define spectrum kernel object specK1 <- spectrumKernel(k=1, normalized=FALSE) ## show kernel object show(specK1) ## compute explicit representation for the first 5 sequences ## in dense format er <- getExRep(ccseq, specK1, sel=1:5, sparse=FALSE) ## show dense explicit representation show(er)