IsomirDataSeqFromMirtop {isomiRs} | R Documentation |
mirtop
output into IsomirDataSeq
The tabular output of mirtop is compatible with IsomirDataSeq. This function allows to import the data and filter low confidence isomiRs for downstream analysis.
IsomirDataSeqFromMirtop(mirtop, coldata, ...)
mirtop |
data.frame with the output of |
coldata |
data.frame with the metadata of the samples |
... |
It supports the same parameters as in IsomirDataSeqFromRawData. |
The output is generated with mirtop export --format isomir
.
IsomirDataSeq class object.
library(readr) path <- system.file("extra", "mirtop", package="isomiRs") fn <- list.files(path, full.names = TRUE) de <- data.frame(row.names=c("sample1" , "sample2"), condition = c("cc", "cc")) # mirtop export --format isomir .... IsomirDataSeqFromMirtop(read_tsv(fn), de)