getWellFeatures {imageHTS} | R Documentation |
Get well metadata, features and annotation information.
getWellFeatures(x, uname, feature=TRUE)
x |
An imageHTS object. |
uname |
a character vector, containing well names.
See |
feature |
A character vectors containing the requested features.
Default is |
getWellFeatures
return fData
, the well features
loaded during the configure
and annotate
steps.
Features include: controlStatus
, the well content status
derived from \'plateconf.txt\'.
Returns a data frame containing well features.
Gregoire Pau, gregoire.pau@embl.de, 2010
## initialize imageHTS object using the local submorph screen local = tempdir() server = system.file('submorph', package='imageHTS') x = parseImageConf('conf/imageconf.txt', localPath=local, serverURL=server) x = configure(x, 'conf/description.txt', 'conf/plateconf.txt', 'conf/screenlog.txt') x = annotate(x, 'conf/annotation.txt') ## select non-empty wells unames = setdiff(getUnames(x), getUnames(x, content='empty')) getWellFeatures(x, unames)