remove_nonstandard_chromosomes1d {idr2d}R Documentation

Removes Peaks on Non-standard Chromosomes

Description

Removes Peaks on Non-standard Chromosomes

Usage

remove_nonstandard_chromosomes1d(x)

Arguments

x

data frame of genomic peaks, with the following columns (position of columns matter, column names are irrelevant):

column 1: chr character; genomic location of peak - chromosome (e.g., "chr3")
column 2: start integer; genomic location of peak - start coordinate
column 3: end integer; genomic location of peak - end coordinate
column 4: value numeric; p-value, FDR, or heuristic used to rank the peaks

Value

x without non-standard chromosomes.

Examples

rep1_df <- remove_nonstandard_chromosomes1d(idr2d:::chipseq$rep1_df)


[Package idr2d version 1.4.0 Index]