readUndirectedInteractionsFromCsv {ibh} | R Documentation |
This function reads the undirected interactions from a csv file and creates the interaction list. The csv file must contain two names: first gene/protein name, second the interactor.
readUndirectedInteractionsFromCsv(fileName, sepValue, headerValue)
fileName |
name of the CSV file containing te interactions |
sepValue |
the same as "sep" in read.csv function,it is the value of the field separator character. |
headerValue |
whether the CSV file has a header or not, TRUE if the file has a header row, FALSE otherwise |
A list containing the interactions. For each gene/protein, the is an entry in the list with "name" containing name of the gen/protein and "interactors" containing the list of genes/proteins interacting with it.
Kircicegi Korkmaz
##-interactionList <- readUndirectedInteractionsFromCsv("Arabidopsis_BioGRID-3.1.72.entrezid.csv", " ", FALSE);