topTraits {gwascat}R Documentation

operations on GWAS catalog

Description

operations on GWAS catalog

Usage

topTraits(gwwl, n = 10, tag = "DISEASE/TRAIT")

Arguments

gwwl

instance of {gwaswloc}

n

numeric, number of traits to report

tag

character, name of field to be used for trait enumeration

Value

topTraits returns a character vector of most frequently occurring traits in the database

locs4trait returns a {gwaswloc} object with records defining associations to the specified trait

chklocs returns a logical that is TRUE when the asserted locations of SNP in the GWAS catalog agree with the locations given in the dbSNP package SNPlocs.Hsapiens.dbSNP144.GRCh37

Author(s)

VJ Carey <stvjc@channing.harvard.edu>

Examples


data(ebicat_2020_04_30)
topTraits(ebicat_2020_04_30)


[Package gwascat version 2.22.0 Index]