readBed {groHMM} | R Documentation |
Bed file format is assumed to be either four column: seqnames, start, end, strand columns; or six column: seqnames, start, end, name, score, and strand. Three column format is also possible when there is no strand information.
readBed(file, ...)
file |
Path to the input file. |
... |
Extra argument passed to read.table |
Any additional arguments availiable to read.table can be specified.
Returns GRanges object representing mapped reads.
Minho Chae and Charles G. Danko.