prepareSPIA {graphite} | R Documentation |
Prepare pathway dataset needed by runSPIA. See runSPIA
and
spia
for more details.
prepareSPIA(db, pathwaySetName, print.names = FALSE)
db |
a |
pathwaySetName |
name of the output pathway set. |
print.names |
print pathway names as the conversion advances. |
Tarca AL, Draghici S, Khatri P, Hassan SS, Mittal P, Kim JS, Kim CJ, Kusanovic JP, Romero R. A novel signaling pathway impact analysis. Bioinformatics. 2009 Jan 1;25(1):75-82.
Adi L. Tarca, Sorin Draghici, Purvesh Khatri, et. al, A Signaling Pathway Impact Analysis for Microarray Experiments, 2008, Bioinformatics, 2009, 25(1):75-82.
Draghici, S., Khatri, P., Tarca, A.L., Amin, K., Done, A., Voichita, C., Georgescu, C., Romero, R.: A systems biology approach for pathway level analysis. Genome Research, 17, 2007.