plotReads {girafe} | R Documentation |
Function to plot aligned reads along the chromosome
plotReads(dat, ylim, strand = "plus", vpr, sampleColor = NULL, zeroLine = FALSE, main, pointSize = unit(1, "mm"), cexAxisLabel = 1, cexAxis = 1, ylab, ...)
dat |
a list with arguments
|
ylim |
y-axis limits of the plotting window |
strand |
string; which of the two strands is plotted |
vpr |
which viewport to use for this plot |
sampleColor |
which colour to use for the data |
zeroLine |
logical; should a line at y=0 be drawn? |
main |
string; main title for the plot |
pointSize |
width of each dot/bar |
cexAxisLabel |
numeric; expansion factor for the axis labels |
cexAxis |
numeric; expansion factor for the axis labels |
ylab |
y-axis label |
... |
further arguments passed on to the more primitive plotting functions that are used |
This function is used inside the plotting method for objects
of class AlignedGenomeIntervals
.
returns Null
; called for plotting single reads
inside the function plotAligned
Joern Toedling