getResults {gep2pep}R Documentation

Extracts the results matrix from CondSEA or PathSEA output

Description

Extracts the results matrix from CondSEA or PathSEA output

Usage

getResults(analysis, collection)

Arguments

analysis

The output of either CondSEA or PathSEA.

collection

One of the names returned by getCollections.

Value

A 2-columns matrix including ESs and p-values (see details) for each pathway database and condition.

See Also

CondSEA, PathSEA

Examples

db <- loadSamplePWS()
repo_path <- file.path(tempdir(), "gep2pepTemp")

rp <- createRepository(repo_path, db)
geps <- loadSampleGEP()
buildPEPs(rp, geps)

pgset <- c("(+)_chelidonine", "(+/_)_catechin")
psea <- CondSEA(rp, pgset)

getResults(psea, "c3_TFT")

unlink(repo_path, TRUE)


[Package gep2pep version 1.10.0 Index]