gene2pathways {gep2pep} | R Documentation |
Given a gene, find the set of pathways that involve it in each
collection of the repository. This can be used to define a set of
pathways for the PathSEA
.
gene2pathways(rp, genes, and = TRUE)
rp |
A repository created by |
genes |
A vector of gene identifiers of the same type as that used to create the repository. |
and |
If set to TRUE (default), will return sets containing
all of |
A database of pathways suitable as input to
PathSEA
.
createRepository, PathSEA
db <- loadSamplePWS() repo_path <- file.path(tempdir(), "gep2pepTemp") rp <- createRepository(repo_path, db) ## Finding all pathways containing "FAM126A": subpw <- gene2pathways(rp, "FAM126A") print(names(subpw)) unlink(repo_path, TRUE)