segs2Granges {genoset} | R Documentation |
GenoSet contains a number of functions that work on segments. Many work on a data.frame of segments, like segTable and runCBS. This function converts one of these tables in a GRanges. The three columns specifying the ranges become the GRanges and all other columns go into the 'mcols' portion of the GRanges object.
segs2Granges(segs)
segs |
data.frame with loc.start, loc.end, and chrom columns, like from segTable or runCBS |
GRanges
Other 'segmented data': bounds2Rle
,
rangeSegMeanLength
, runCBS
,
segPairTable
, segTable
,
segs2RleDataFrame
, segs2Rle