toGenomeOrder {genoset} | R Documentation |
Returns a re-ordered object sorted by chromosome and start position. If strict=TRUE, then chromosomes must be in order specified by chrOrder. If ds is already ordered, no re-ordering is done. Therefore, checking order with isGenomeOrder, is unnecessary if order will be corrected if isGenomeOrder is FALSE.
toGenomeOrder(ds, strict = TRUE)
ds |
GenoSet or GRanges |
strict |
logical, should chromosomes be in order specified by chrOrder? |
toGenomeOrder for GRanges differs from sort in that it orders by chromsome and start position only, rather than chromsome, strand, start, and width.
re-ordered ds
Other 'genome ordering': chrOrder
,
isGenomeOrder
data(genoset,package='genoset') toGenomeOrder( genoset.ds, strict=TRUE ) toGenomeOrder( genoset.ds, strict=FALSE ) toGenomeOrder( rowRanges(genoset.ds) )