orderBy {genomation} | R Documentation |
Reorder all elements of a ScoreMatrixList to a given ordering vector
orderBy(sml, ord.vec) ## S4 method for signature 'ScoreMatrixList' orderBy(sml, ord.vec)
sml |
|
ord.vec |
an integer vector |
ScoreMatrixList
object
library(GenomicRanges) data(cage) data(cpgi) data(promoters) cage$tpm = NULL targets = GRangesList(cage=cage, cpgi=cpgi) sml = ScoreMatrixList(targets, promoters, bin.num=10) kmeans.clust = kmeans(sml$cage,3) sml.ordered = orderBy(sml, kmeans.clust$cluster) multiHeatMatrix(sml.ordered)